Ligand validation:5MGD

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5MGD designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5MGD_NAG_A_1760	67%	57%	0.117	0.924	0.34	1.27	-	1	0	0	100%	0.9333
5MGD_NAG_A_1777	37%	67%	0.21	0.91	0.36	0.9	-	-	0	0	100%	0.9333
5MGD_NAG_A_1478	13%	61%	0.304	0.845	0.45	1.01	-	1	0	0	100%	0.9333
5MGD_NAG_A_1739	9%	38%	0.308	0.795	0.48	1.97	-	4	0	0	100%	0.9333
5MGD_NAG_A_1156	2%	43%	0.434	0.67	0.68	1.58	-	4	0	0	100%	0.9333
5MGD_NAG_A_1402	1%	47%	0.392	0.57	0.65	1.42	-	1	0	0	100%	0.9333
5IFT_NAG_A_1760	63%	60%	0.161	0.958	0.36	1.12	-	2	1	0	100%	0.9333
5JUV_NAG_A_1760	62%	48%	0.13	0.922	0.42	1.56	-	2	2	0	100%	0.9333
5IHR_NAG_A_1777	60%	57%	0.143	0.928	0.5	1.11	-	2	0	0	100%	0.9333
5MGC_NAG_A_1760	55%	54%	0.125	0.894	0.49	1.26	-	2	1	0	100%	0.9333
5IFP_NAG_A_1777	54%	77%	0.121	0.884	0.29	0.61	-	-	0	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333
1OC6_NAG_A_500	100%	67%	0.041	0.988	0.46	0.8	-	1	0	0	100%	0.9333
1UWC_NAG_A_262	100%	54%	0.046	0.99	0.81	0.95	-	-	0	0	100%	0.9333
6ZE6_NAG_B_703	99%	52%	0.044	0.984	0.78	1.07	-	2	0	0	100%	0.8667
6ZE2_NAG_B_704	99%	56%	0.042	0.979	0.73	0.95	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.