GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5MF4 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5MF4_GDP_B_501 | 96% | 20% | 0.057 | 0.977 | 1.42 | 1.82 | 3 | 9 | 1 | 0 | 100% | 1 |
| 5MF4_GDP_D_501 | 81% | 23% | 0.089 | 0.945 | 1.3 | 1.77 | 4 | 7 | 1 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 5JCB_GDP_B_501 | 100% | 20% | 0.022 | 0.997 | 1.38 | 1.89 | 5 | 8 | 0 | 0 | 100% | 1 |
| 7VMK_GDP_B_501 | 100% | 24% | 0.025 | 0.997 | 1.28 | 1.73 | 4 | 6 | 0 | 0 | 100% | 1 |
| 6MZG_GDP_D_600 | 100% | 26% | 0.026 | 0.997 | 1.14 | 1.75 | 2 | 6 | 2 | 0 | 100% | 1 |
| 6PC4_GDP_B_501 | 100% | 27% | 0.025 | 0.996 | 1.16 | 1.69 | 2 | 6 | 1 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
| 4EKC_GDP_A_400 | 100% | 24% | 0.016 | 0.999 | 1.2 | 1.82 | 4 | 6 | 3 | 0 | 100% | 1 |
