5JYX | pdb_00005jyx


GD1: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one

GD1 is a Ligand Of Interest in 5JYX designated by the RCSB
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Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5JYX_GD1_C_201 92% 6% 0.058 0.9542.7 2.21 4 400100%1
5JYX_GD1_F_201 90% 6% 0.058 0.9472.4 2.5 4 810100%1
5JYX_GD1_N_201 88% 5% 0.061 0.9412.8 2.5 4 600100%1
5JYX_GD1_A_201 87% 6% 0.075 0.9532.75 2.17 4 400100%1
5JYX_GD1_M_201 87% 5% 0.067 0.9422.71 2.51 3 600100%1
5JYX_GD1_I_201 85% 5% 0.066 0.9342.81 2.31 4 610100%1
5JYX_GD1_E_201 84% 4% 0.074 0.9392.43 2.92 4 700100%1
5JYX_GD1_B_201 83% 4% 0.077 0.9392.73 2.76 4 700100%1
5JYX_GD1_G_201 82% 6% 0.072 0.9292.46 2.51 5 700100%1
5JYX_GD1_D_201 79% 6% 0.073 0.922.7 2.3 3 620100%1
5JYX_GD1_H_201 79% 6% 0.066 0.9122.9 1.98 3 600100%1
5JYX_GD1_K_201 78% 4% 0.075 0.9213.12 2.47 3 600100%1
5JYX_GD1_O_201 78% 4% 0.067 0.9112.8 2.63 4 820100%1
5JYX_GD1_J_201 64% 6% 0.09 0.8862.56 2.49 4 520100%1
5JYX_GD1_L_201 63% 13% 0.09 0.8822.26 1.66 4 400100%1
4F8B_GD1_D_201 61% 7% 0.112 0.9022.24 2.54 2 700100%1