PDA: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID
PDA is a Ligand Of Interest in 5G2Q designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5G2Q_PDA_A_1000 | 94% | 18% | 0.07 | 0.978 | 2.31 | 1.14 | 2 | 2 | 2 | 0 | 100% | 1 |
| 5G2Q_PDA_G_1000 | 93% | 17% | 0.073 | 0.974 | 2.23 | 1.34 | 3 | 4 | 0 | 0 | 100% | 1 |
| 5G2Q_PDA_B_1000 | 90% | 15% | 0.084 | 0.974 | 2.18 | 1.55 | 3 | 6 | 3 | 0 | 100% | 1 |
| 5G2Q_PDA_H_1000 | 89% | 11% | 0.083 | 0.968 | 2.52 | 1.55 | 2 | 3 | 0 | 0 | 100% | 1 |
| 5G2Q_PDA_D_1000 | 88% | 14% | 0.086 | 0.969 | 2.17 | 1.59 | 3 | 6 | 2 | 0 | 100% | 1 |
| 5G2Q_PDA_C_1000 | 88% | 15% | 0.085 | 0.966 | 2.34 | 1.38 | 3 | 3 | 3 | 0 | 100% | 1 |
| 5G2Q_PDA_E_1000 | 83% | 14% | 0.094 | 0.957 | 2.43 | 1.38 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5G2Q_PDA_I_1000 | 83% | 14% | 0.096 | 0.959 | 2.36 | 1.48 | 2 | 7 | 2 | 0 | 100% | 1 |
| 5G2Q_PDA_F_1000 | 81% | 14% | 0.099 | 0.955 | 2.54 | 1.28 | 2 | 2 | 4 | 0 | 100% | 1 |
| 5G2Q_PDA_L_1000 | 72% | 11% | 0.113 | 0.941 | 2.57 | 1.55 | 3 | 4 | 2 | 0 | 100% | 1 |
| 5G2Q_PDA_K_1000 | 72% | 16% | 0.115 | 0.943 | 2.26 | 1.36 | 2 | 3 | 1 | 0 | 100% | 1 |
| 5G2Q_PDA_J_1000 | 64% | 19% | 0.122 | 0.924 | 2.26 | 1.12 | 2 | 1 | 1 | 0 | 100% | 1 |
| 8H21_PDA_A_407 | 98% | 12% | 0.051 | 0.98 | 2.18 | 1.77 | 3 | 3 | 1 | 0 | 100% | 1 |
| 2Q3D_PDA_A_311 | 95% | 19% | 0.063 | 0.974 | 1.77 | 1.62 | 3 | 3 | 2 | 1 | 100% | 1 |
| 5WT6_PDA_A_503 | 95% | 23% | 0.069 | 0.98 | 1.76 | 1.33 | 6 | 3 | 2 | 0 | 100% | 1 |
| 6KG1_PDA_A_503 | 81% | 2% | 0.094 | 0.952 | 3.58 | 2.96 | 7 | 9 | 8 | 0 | 100% | 1 |
| 5XT6_PDA_B_501 | 75% | 9% | 0.084 | 0.919 | 3.07 | 1.34 | 3 | 5 | 2 | 0 | 100% | 1 |














