4YDJ | pdb_00004ydj


NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 4YDJ designated by the RCSB
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Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4YDJ_NAG_I_505 57% 83% 0.084 0.8570.23 0.48 - -00100%1
4YDJ_NAG_G_508 56% 87% 0.096 0.8650.22 0.41 - -00100%1
4YDJ_NAG_G_505 44% 78% 0.091 0.8120.3 0.51 - -00100%1
4YDJ_NAG_G_503 37% 85% 0.112 0.8080.23 0.45 - -00100%1
4YDJ_NAG_I_503 36% 86% 0.107 0.7970.23 0.43 - -00100%1
4YDJ_NAG_I_508 36% 81% 0.114 0.8020.28 0.48 - -00100%1
4YDJ_NAG_G_501 20% 85% 0.124 0.7240.19 0.47 - -00100%1
4YDJ_NAG_H_301 20% 80% 0.097 0.6940.24 0.52 - -00100%1
4YDJ_NAG_I_504 16% 83% 0.123 0.6930.29 0.42 - -00100%1
4YDJ_NAG_G_504 11% 85% 0.125 0.6380.24 0.44 - -00100%1
4YDJ_NAG_I_501 10% 83% 0.131 0.6430.2 0.51 - -00100%1
4YDJ_NAG_A_301 10% 82% 0.113 0.620.2 0.53 - -00100%1
4YDJ_NAG_G_506 9% 82% 0.127 0.6230.26 0.47 - -00100%1
4YDJ_NAG_G_507 9% 81% 0.123 0.6090.2 0.55 - -00100%1
4YDJ_NAG_I_502 8% 85% 0.132 0.6150.25 0.43 - -00100%1
4YDJ_NAG_I_506 5% 84% 0.149 0.552 0.26 0.43 - -00100%1
4YDJ_NAG_I_509 4% 82% 0.128 0.499 0.25 0.48 - -00100%1
4YDJ_NAG_B_301 4% 84% 0.163 0.536 0.28 0.42 - -00100%1
4YDJ_NAG_G_509 3% 79% 0.132 0.473 0.26 0.53 - -00100%1
4YDJ_NAG_I_507 1% 80% 0.137 0.364 0.21 0.55 - -00100%1
4YDJ_NAG_G_502 1% 63% 0.154 0.37 0.55 0.72 - 110100%1
4YDJ_NAG_L_301 1% 83% 0.149 0.232 0.22 0.5 - -00100%1
5F9W_NAG_G_505 100% 83% 0.022 0.9940.21 0.5 - -00100%1
4YDL_NAG_A_503 100% 74% 0.028 0.9910.38 0.51 - -00100%1
4DVS_NAG_A_503 100% 64% 0.029 0.9880.5 0.73 - -00100%1
7SX7_NAG_G_502 100% 58% 0.032 0.9860.67 0.78 - -00100%1
7SX6_NAG_A_507 99% 87% 0.035 0.9880.17 0.45 - -00100%1
2QFR_NAG_B_451 100% 64% 0.013 0.9980.49 0.72 - 100100%1
5LDS_NAG_C_1003 100% 66% 0.016 0.9970.54 0.62 - -30100%1
7DDF_NAG_B_401 100% 84% 0.016 0.9960.21 0.49 - -00100%1
2HQM_NAG_A_1301 100% 62% 0.018 0.9960.59 0.7 - -00100%1
3THD_NAG_C_704 100% 59% 0.019 0.9940.45 0.96 - -00100%1