KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
KDO is a Ligand Of Interest in 4UMF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4UMF_KDO_B_1176 | 48% | 19% | 0.152 | 0.896 | 1.43 | 1.98 | 2 | 6 | 3 | 0 | 100% | 1 |
| 4UMF_KDO_B_1177 | 35% | 21% | 0.152 | 0.84 | 1.74 | 1.6 | 3 | 3 | 4 | 0 | 100% | 1 |
| 4UMF_KDO_C_1176 | 35% | 23% | 0.191 | 0.877 | 1.56 | 1.64 | 3 | 4 | 1 | 0 | 100% | 1 |
| 4UMF_KDO_A_1176 | 25% | 20% | 0.176 | 0.81 | 1.61 | 1.78 | 3 | 4 | 3 | 0 | 100% | 1 |
| 4UME_KDO_A_1174 | 50% | 44% | 0.149 | 0.899 | 1.19 | 1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3DUR_KDO_A_303 | 100% | 29% | 0.021 | 0.994 | 1.55 | 1.32 | 3 | 2 | 0 | 0 | 100% | 1 |
| 3DUU_KDO_B_114 | 100% | 43% | 0.022 | 0.993 | 1.01 | 1.21 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9YFZ_KDO_A_402 | 100% | 29% | 0.021 | 0.995 | 1.56 | 1.27 | 2 | 2 | 0 | 0 | 100% | 1 |
| 9YFY_KDO_A_402 | 100% | 30% | 0.024 | 0.994 | 1.61 | 1.2 | 2 | 2 | 0 | 0 | 94% | 1 |
| 3DUS_KDO_C_108 | 100% | 46% | 0.034 | 0.985 | 1 | 1.09 | 1 | 1 | 0 | 0 | 100% | 1 |
