KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
KDO is a Ligand Of Interest in 4UMF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4UMF_KDO_B_1176 | 63% | 21% | 0.087 | 0.88 | 1.36 | 1.84 | 2 | 5 | 3 | 0 | 100% | 1 |
| 4UMF_KDO_C_1176 | 45% | 24% | 0.106 | 0.835 | 1.47 | 1.57 | 1 | 3 | 1 | 0 | 100% | 1 |
| 4UMF_KDO_B_1177 | 38% | 20% | 0.109 | 0.809 | 1.68 | 1.61 | 3 | 4 | 4 | 0 | 100% | 1 |
| 4UMF_KDO_A_1176 | 31% | 20% | 0.119 | 0.785 | 1.53 | 1.76 | 3 | 4 | 3 | 0 | 100% | 1 |
| 4UME_KDO_A_1174 | 61% | 43% | 0.094 | 0.882 | 1.13 | 1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9YFZ_KDO_A_402 | 100% | 28% | 0.021 | 0.995 | 1.56 | 1.27 | 2 | 2 | 0 | 0 | 100% | 1 |
| 3DUR_KDO_A_303 | 100% | 27% | 0.021 | 0.994 | 1.55 | 1.32 | 3 | 2 | 0 | 0 | 100% | 1 |
| 3DUU_KDO_B_114 | 100% | 40% | 0.021 | 0.993 | 1.01 | 1.21 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3K8D_KDO_A_1244 | 100% | 11% | 0.017 | 0.997 | 2.53 | 1.56 | 5 | 4 | 0 | 1 | 94% | 1 |
| 9YFY_KDO_A_402 | 100% | 28% | 0.024 | 0.994 | 1.61 | 1.2 | 2 | 2 | 0 | 0 | 94% | 1 |
