Ligand validation:4RKD

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 4RKD designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4RKD_PLP_F_401	88%	3%	0.107	0.982	4.05	2.23	3	5	2	0	100%	0.9375
4RKD_PLP_A_402	85%	6%	0.119	0.984	3.49	1.75	3	7	1	0	100%	0.5625
4RKD_PLP_B_401	85%	4%	0.121	0.986	3.41	2.71	3	10	1	0	100%	0.9375
4RKD_PLP_C_402	80%	2%	0.131	0.982	4.14	2.82	4	8	1	0	100%	0.9375
4RKD_PLP_E_402	53%	7%	0.206	0.968	3.35	1.71	4	4	1	0	100%	0.5625
6ZVG_PLP_C_402	72%	60%	0.135	0.961	0.85	0.66	-	-	1	0	100%	0.9375
6ZUR_PLP_B_405	25%	55%	0.256	0.895	0.68	1.03	-	1	11	0	100%	0.9
6ZUP_PLP_A_401	19%	54%	0.293	0.889	0.84	0.93	-	-	1	0	100%	0.8438
2BIE_PLP_B_1361	100%	32%	0.039	0.989	1.43	1.39	4	3	1	0	100%	0.9375
4NOG_PLP_A_501	100%	40%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	23%	0.045	0.993	1.94	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	17%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375
1JF9_PLP_A_500	100%	14%	0.047	0.994	1.28	2.78	1	11	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.