Ligand validation:4GDJ

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 4GDJ designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4GDJ_NAG_A_506	19%	65%	0.211	0.802	0.46	0.85	-	1	0	0	100%	0.9333
4GDJ_NAG_C_505	13%	53%	0.292	0.83	0.42	1.38	-	2	0	0	100%	0.9333
4GDJ_NAG_B_505	10%	64%	0.345	0.857	0.57	0.79	-	-	0	0	100%	0.9333
4GDJ_NAG_A_505	6%	52%	0.357	0.802	0.57	1.26	-	2	0	0	100%	0.9333
4GDJ_NAG_D_505	4%	60%	0.304	0.682	0.56	0.93	-	1	0	0	100%	0.9333
4GDJ_NAG_B_506	3%	60%	0.354	0.693	0.52	0.97	-	2	0	0	100%	0.9333
4GEZ_NAG_C_502	67%	57%	0.105	0.913	0.6	1.04	-	1	1	0	100%	0.9333
4FVK_NAG_B_505	46%	47%	0.17	0.906	0.37	1.69	-	5	0	0	100%	0.9333
4GDI_NAG_D_504	34%	50%	0.183	0.864	0.54	1.39	-	1	0	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333
1OC6_NAG_A_500	100%	67%	0.041	0.988	0.46	0.8	-	1	0	0	100%	0.9333
1UWC_NAG_A_262	100%	54%	0.046	0.99	0.81	0.95	-	-	0	0	100%	0.9333
6ZE6_NAG_B_703	99%	52%	0.044	0.984	0.78	1.07	-	2	0	0	100%	0.8667
6ZE2_NAG_B_704	99%	56%	0.042	0.979	0.73	0.95	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.