XYS: alpha-D-xylopyranose
XYS is a Ligand Of Interest in 3VSV designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3VSV_XYS_B_708 | 44% | 45% | 0.171 | 0.901 | 1.43 | 0.76 | 1 | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_A_708 | 38% | 51% | 0.18 | 0.882 | 1.13 | 0.77 | - | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_C_706 | 24% | 48% | 0.212 | 0.839 | 1.21 | 0.83 | 1 | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_D_710 | 23% | 47% | 0.215 | 0.84 | 1.31 | 0.78 | 1 | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_B_707 | 17% | 41% | 0.202 | 0.779 | 1.67 | 0.69 | 1 | - | 0 | 0 | 100% | 1 |
| 3VSV_XYS_C_707 | 9% | 39% | 0.247 | 0.736 | 1.73 | 0.72 | 2 | - | 2 | 0 | 100% | 1 |
| 3VSV_XYS_D_709 | 8% | 33% | 0.243 | 0.712 | 1.87 | 0.91 | 3 | - | 3 | 0 | 100% | 1 |
| 3VSV_XYS_C_708 | 3% | 23% | 0.296 | 0.653 | 1.68 | 1.63 | 2 | 3 | 0 | 0 | 100% | 1 |
| 3VSV_XYS_A_709 | 2% | 41% | 0.338 | 0.595 | 1.47 | 0.91 | 1 | 1 | 4 | 0 | 100% | 1 |
| 5A03_XYS_B_1342 | 92% | 35% | 0.063 | 0.953 | 1.68 | 1.01 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8OZ1_XYS_A_804 | 91% | 61% | 0.064 | 0.967 | 0.83 | 0.66 | - | - | 0 | 0 | 90% | 0.9 |
| 8BQA_XYS_AAA_402 | 88% | 36% | 0.058 | 0.951 | 0.83 | 1.77 | - | 3 | 0 | 0 | 90% | 0.9 |
| 7PLC_XYS_C_302 | 85% | 62% | 0.096 | 0.961 | 0.55 | 0.87 | - | 1 | 1 | 0 | 100% | 1 |
| 2CDC_XYS_D_1371 | 82% | 48% | 0.1 | 0.954 | 1.01 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
