XYP: beta-D-xylopyranose

XYP is a Ligand Of Interest in 3VSV designated by the RCSB


Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3VSV_XYP_D_702 83% 22% 0.094 0.9522.15 1.28 4 200100%1
3VSV_XYP_B_701 78% 25% 0.099 0.9432.03 1.2 4 100100%1
3VSV_XYP_A_701 77% 28% 0.102 0.9411.8 1.23 3 200100%1
3VSV_XYP_C_701 74% 20% 0.112 0.9422.35 1.25 5 200100%1
3VSV_XYP_D_701 35% 49% 0.153 0.8380.99 0.97 - -70100%1
3VSV_XYP_A_707 33% 42% 0.166 0.8450.97 1.32 1 170100%1
3VSV_XYP_B_704 30% 53% 0.184 0.8461.08 0.76 1 -00100%1
3VSV_XYP_D_703 23% 50% 0.189 0.8121.06 0.86 1 -10100%1
3VSV_XYP_A_706 22% 38% 0.203 0.8181.26 1.25 - 200100%1
3VSV_XYP_C_703 18% 46% 0.182 0.771.26 0.86 1 -00100%1
3VSV_XYP_D_707 18% 52% 0.195 0.7811.11 0.76 - 100100%1
3VSV_XYP_C_702 18% 54% 0.215 0.7971.04 0.75 - 100100%1
3VSV_XYP_D_705 17% 55% 0.201 0.7821.08 0.65 - -00100%1
3VSV_XYP_A_702 16% 52% 0.206 0.7721.09 0.78 1 -00100%1
3VSV_XYP_A_703 16% 48% 0.257 0.8241.16 0.88 1 100100%1
3VSV_XYP_A_705 16% 42% 0.255 0.8211.03 1.28 - 110100%1
3VSV_XYP_A_704 15% 55% 0.208 0.7681.02 0.7 1 -10100%1
3VSV_XYP_C_705 14% 41% 0.261 0.8121.1 1.23 1 220100%1
3VSV_XYP_B_703 13% 55% 0.302 0.8470.88 0.83 - 100100%1
3VSV_XYP_B_702 12% 44% 0.218 0.7471.16 1.04 1 200100%1
3VSV_XYP_D_706 10% 44% 0.249 0.7540.94 1.27 - 210100%1
3VSV_XYP_D_708 10% 39% 0.21 0.7121.38 1.08 2 100100%1
3VSV_XYP_B_705 10% 46% 0.244 0.7451.19 0.91 1 -00100%1
3VSV_XYP_B_706 9% 51% 0.232 0.7271.12 0.78 1 -00100%1
3VSV_XYP_C_704 7% 36% 0.212 0.671.51 1.12 2 200100%1
3VSV_XYP_D_704 7% 49% 0.311 0.7630.92 1.05 - 120100%1
1OD8_XYP_A_1311 100% 63% 0.047 0.9920.75 0.64 - -00100%1
1V0M_XYP_A_1304 99% 70% 0.035 0.9930.82 0.33 - -0090%0.9
1V0N_XYP_A_1306 98% 59% 0.048 0.9890.76 0.78 - -0090%0.9
1V0L_XYP_A_1305 98% 71% 0.055 0.9920.52 0.57 - -0090%0.9
3C6Q_XYP_C_500 92% 32% 0.082 0.9721.82 0.99 1 100100%1