3TDK
UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE
UPG is a Ligand Of Interest in 3TDK designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3TDK_UPG_B_501 | 62% | 18% | 0.181 | 0.975 | 1.77 | 1.95 | 6 | 7 | 5 | 0 | 100% | 1 |
| 3TDK_UPG_H_501 | 59% | 18% | 0.191 | 0.976 | 1.71 | 1.96 | 4 | 7 | 7 | 0 | 100% | 1 |
| 3TDK_UPG_D_501 | 58% | 33% | 0.194 | 0.975 | 0.92 | 1.81 | 1 | 8 | 3 | 0 | 100% | 1 |
| 3TDK_UPG_L_501 | 58% | 43% | 0.179 | 0.958 | 0.86 | 1.38 | 1 | 5 | 3 | 0 | 100% | 1 |
| 3TDK_UPG_C_501 | 57% | 24% | 0.193 | 0.972 | 1.7 | 1.57 | 4 | 7 | 6 | 0 | 100% | 1 |
| 3TDK_UPG_E_501 | 56% | 40% | 0.192 | 0.967 | 0.84 | 1.56 | 1 | 7 | 5 | 0 | 100% | 1 |
| 3TDK_UPG_K_501 | 56% | 12% | 0.175 | 0.949 | 2.3 | 1.96 | 5 | 8 | 11 | 0 | 100% | 1 |
| 3TDK_UPG_J_501 | 56% | 31% | 0.2 | 0.974 | 1.19 | 1.64 | 3 | 8 | 2 | 0 | 100% | 1 |
| 3TDK_UPG_G_501 | 56% | 20% | 0.195 | 0.968 | 1.7 | 1.84 | 5 | 9 | 6 | 0 | 100% | 1 |
| 3TDK_UPG_A_501 | 52% | 18% | 0.21 | 0.969 | 1.64 | 2.03 | 6 | 5 | 8 | 0 | 100% | 1 |
| 3TDK_UPG_I_501 | 52% | 19% | 0.202 | 0.96 | 1.74 | 1.86 | 5 | 11 | 3 | 0 | 100% | 1 |
| 3TDK_UPG_F_501 | 45% | 36% | 0.212 | 0.947 | 0.92 | 1.68 | 1 | 7 | 4 | 0 | 100% | 1 |
| 2Q3E_UPG_C_501 | 99% | 42% | 0.057 | 0.987 | 0.93 | 1.37 | - | 6 | 2 | 0 | 100% | 1 |
| 3KHU_UPG_E_502 | 86% | 35% | 0.096 | 0.964 | 1.15 | 1.5 | 4 | 9 | 0 | 0 | 100% | 1 |
| 4EDF_UPG_B_501 | 85% | 42% | 0.101 | 0.968 | 0.9 | 1.37 | 2 | 5 | 0 | 0 | 100% | 1 |
| 6C5A_UPG_F_502 | 79% | 62% | 0.133 | 0.98 | 0.77 | 0.68 | - | 1 | 2 | 0 | 100% | 1 |
| 6C4J_UPG_A_502 | 76% | 61% | 0.142 | 0.981 | 0.78 | 0.68 | - | - | 1 | 0 | 100% | 1 |
| 3JSZ_UPG_A_526 | 98% | 59% | 0.057 | 0.982 | 0.8 | 0.75 | - | - | 0 | 0 | 100% | 1 |
| 6K0I_UPG_A_402 | 98% | 29% | 0.057 | 0.98 | 1.31 | 1.63 | 5 | 11 | 2 | 0 | 100% | 1 |
| 1EK6_UPG_A_401 | 98% | 48% | 0.061 | 0.982 | 0.89 | 1.12 | - | 3 | 1 | 0 | 100% | 1 |
| 1I24_UPG_A_402 | 98% | 49% | 0.061 | 0.982 | 0.87 | 1.11 | 1 | 4 | 1 | 0 | 100% | 0.9833 |
| 7VZ6_UPG_A_501 | 97% | 67% | 0.071 | 0.987 | 0.52 | 0.73 | - | - | 0 | 0 | 100% | 1 |
