UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3MJ4 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3MJ4_UDP_A_500 | 82% | 26% | 0.086 | 0.944 | 1.07 | 1.78 | 2 | 8 | 1 | 0 | 100% | 1 |
| 3MJ4_UDP_H_500 | 81% | 29% | 0.083 | 0.938 | 0.97 | 1.76 | - | 7 | 0 | 0 | 100% | 1 |
| 3MJ4_UDP_J_500 | 80% | 29% | 0.088 | 0.942 | 0.97 | 1.76 | - | 7 | 1 | 0 | 100% | 1 |
| 3MJ4_UDP_I_500 | 80% | 29% | 0.076 | 0.956 | 0.93 | 1.76 | - | 5 | 0 | 0 | 84% | 1 |
| 3MJ4_UDP_F_500 | 79% | 32% | 0.084 | 0.933 | 0.99 | 1.6 | 2 | 5 | 0 | 0 | 100% | 1 |
| 3MJ4_UDP_C_500 | 75% | 32% | 0.089 | 0.926 | 0.92 | 1.67 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3MJ4_UDP_G_500 | 74% | 33% | 0.091 | 0.923 | 0.88 | 1.63 | - | 7 | 2 | 0 | 100% | 1 |
| 3MJ4_UDP_E_500 | 72% | 31% | 0.084 | 0.938 | 0.94 | 1.67 | - | 5 | 0 | 0 | 84% | 1 |
| 3MJ4_UDP_B_500 | 44% | 34% | 0.116 | 0.842 | 0.95 | 1.54 | 1 | 6 | 4 | 0 | 100% | 1 |
| 3HE3_UDP_C_400 | 97% | 33% | 0.048 | 0.975 | 1 | 1.55 | - | 6 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
