Ligand validation:3HDY

GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE

GDU is a Ligand Of Interest in 3HDY designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3HDY_GDU_F_500	72%	3%	0.139	0.963	2.66	3.61	4	15	3	0	100%	1
3HDY_GDU_D_500	71%	3%	0.15	0.971	2.66	3.6	4	15	6	0	100%	1
3HDY_GDU_B_500	70%	3%	0.146	0.966	2.64	3.67	3	18	4	0	100%	1
3HDY_GDU_G_500	67%	3%	0.154	0.964	2.68	3.62	4	16	2	0	100%	1
3HDY_GDU_A_500	59%	3%	0.163	0.946	2.71	3.63	4	19	3	0	100%	1
3HDY_GDU_H_500	57%	3%	0.165	0.943	2.67	3.58	4	16	0	0	100%	1
3HDY_GDU_I_500	56%	3%	0.18	0.952	2.67	3.6	4	14	2	0	100%	1
3HDY_GDU_E_500	51%	3%	0.192	0.948	2.66	3.63	3	17	1	0	100%	1
3HDY_GDU_C_500	51%	3%	0.176	0.931	2.66	3.65	4	17	7	0	100%	1
3HDY_GDU_J_500	51%	3%	0.193	0.947	2.67	3.61	4	14	0	0	100%	1
3HDQ_GDU_A_500	83%	3%	0.125	0.985	2.66	3.56	5	15	0	0	100%	0.8439
4HO9_GDU_B_300	99%	27%	0.05	0.983	1.38	1.71	4	9	0	0	100%	1
6GX0_GDU_A_402	97%	48%	0.067	0.98	0.81	1.22	1	6	0	0	100%	0.6
5M7D_GDU_A_402	96%	44%	0.071	0.983	0.91	1.29	1	5	0	0	100%	1
7YS9_GDU_A_404	91%	77%	0.087	0.974	0.39	0.51	-	1	1	0	100%	0.4
4LW3_GDU_A_402	89%	13%	0.104	0.983	2.67	1.52	15	10	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.