GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 3D6T designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3D6T_GDP_B_1 | 94% | 19% | 0.063 | 0.97 | 1.24 | 2.1 | 3 | 13 | 0 | 0 | 100% | 1 |
| 6XAF_GDP_A_1602 | 100% | 4% | 0.03 | 0.994 | 3.65 | 1.86 | 17 | 10 | 0 | 0 | 100% | 1 |
| 6OJE_GDP_B_1602 | 99% | 29% | 0.044 | 0.983 | 1.05 | 1.67 | 2 | 6 | 0 | 0 | 100% | 1 |
| 6OJF_GDP_A_1602 | 98% | 27% | 0.047 | 0.983 | 1.24 | 1.61 | 5 | 6 | 0 | 0 | 100% | 1 |
| 2ZEJ_GDP_A_1 | 95% | 25% | 0.06 | 0.974 | 1.21 | 1.72 | 3 | 9 | 0 | 0 | 100% | 1 |
| 9C76_GDP_B_201 | 90% | 68% | 0.073 | 0.96 | 0.51 | 0.57 | - | - | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
