Ligand validation:2YMD

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
2YMD_SRO_C_1213	84%	41%	0.06	0.967	1.23	1	2	2	1	100%	1
2YMD_SRO_D_1214	83%	39%	0.06	0.965	1.27	1.04	1	2	1	100%	1
2YMD_SRO_F_1214	79%	40%	0.067	0.958	1.24	1.01	1	2	1	100%	1
2YMD_SRO_A_1213	78%	37%	0.068	0.957	1.29	1.14	2	2	1	100%	1
2YMD_SRO_H_1206	77%	40%	0.07	0.958	1.27	1.01	2	1	1	100%	1
2YMD_SRO_B_1212	76%	38%	0.07	0.955	1.33	1.05	3	2	1	100%	1
2YMD_SRO_J_1213	72%	44%	0.08	0.954	1.23	0.85	2	1	1	100%	1
2YMD_SRO_I_1213	69%	40%	0.084	0.947	1.27	1.01	1	2	0	100%	1
2YMD_SRO_E_1213	61%	41%	0.098	0.935	1.26	0.97	2	1	0	100%	1
2YMD_SRO_G_1213	58%	39%	0.099	0.919	1.28	1.03	1	2	1	100%	1
8GDL_SRO_A_401	99%	20%	0.023	0.993	1.77	1.59	2	5	0	100%	1
2QEH_SRO_A_145	92%	10%	0.046	0.978	2.54	1.78	3	4	0	100%	1
7DAL_SRO_B_302	88%	15%	0.041	0.953	1.74	2	3	4	1	100%	1
5MT9_SRO_W_101	83%	15%	0.053	0.952	1.96	1.78	4	4	0	100%	1
7TX8_SRO_C_401	83%	63%	0.059	0.961	0.66	0.59	-	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

2YMD | pdb_00002ymd