CVM: CYMAL-4
CVM is a Ligand Of Interest in 2XQT designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2XQT_CVM_A_1085 | 36% | 87% | 0.115 | 0.956 | 0.27 | 0.36 | - | - | 1 | 0 | 18% | 1 |
| 2XQT_CVM_A_1092 | 28% | 56% | 0.178 | 0.836 | 0.54 | 1 | 1 | 3 | 3 | 0 | 100% | 1 |
| 2XQT_CVM_A_1087 | 28% | 41% | 0.15 | 0.801 | 0.7 | 1.47 | 1 | 7 | 6 | 0 | 100% | 1 |
| 2XQT_CVM_C_1083 | 25% | 69% | 0.145 | 0.93 | 0.23 | 0.79 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_C_1092 | 22% | 46% | 0.188 | 0.806 | 0.71 | 1.25 | 1 | 5 | 2 | 0 | 100% | 1 |
| 2XQT_CVM_C_1084 | 18% | 51% | 0.185 | 0.774 | 0.55 | 1.2 | - | 4 | 14 | 0 | 100% | 1 |
| 2XQT_CVM_D_1083 | 17% | 71% | 0.174 | 0.907 | 0.23 | 0.73 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_C_1087 | 17% | 72% | 0.172 | 0.902 | 0.26 | 0.67 | - | - | 0 | 0 | 21% | 1 |
| 2XQT_CVM_E_1085 | 17% | 81% | 0.178 | 0.914 | 0.26 | 0.49 | - | - | 4 | 0 | 18% | 1 |
| 2XQT_CVM_C_1095 | 17% | 62% | 0.223 | 0.809 | 0.45 | 0.83 | - | 1 | 0 | 0 | 100% | 1 |
| 2XQT_CVM_A_1084 | 15% | 75% | 0.169 | 0.885 | 0.26 | 0.59 | - | - | 0 | 0 | 21% | 1 |
| 2XQT_CVM_C_1086 | 15% | 71% | 0.202 | 0.918 | 0.23 | 0.73 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_C_1089 | 15% | 90% | 0.199 | 0.919 | 0.27 | 0.28 | - | - | 6 | 0 | 18% | 1 |
| 2XQT_CVM_C_1093 | 14% | 68% | 0.207 | 0.911 | 0.18 | 0.87 | - | - | 6 | 0 | 21% | 1 |
| 2XQT_CVM_E_1090 | 12% | 86% | 0.22 | 0.917 | 0.33 | 0.32 | - | - | 1 | 0 | 18% | 1 |
| 2XQT_CVM_E_1083 | 12% | 76% | 0.168 | 0.849 | 0.23 | 0.61 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_B_1083 | 10% | 85% | 0.207 | 0.879 | 0.34 | 0.35 | - | - | 3 | 0 | 18% | 1 |
| 2XQT_CVM_E_1089 | 10% | 80% | 0.203 | 0.862 | 0.21 | 0.56 | - | - | 1 | 0 | 24% | 1 |
| 2XQT_CVM_B_1085 | 10% | 71% | 0.223 | 0.873 | 0.23 | 0.74 | - | - | 2 | 0 | 24% | 1 |
| 2XQT_CVM_A_1089 | 9% | 69% | 0.255 | 0.91 | 0.24 | 0.79 | - | - | 0 | 0 | 21% | 1 |
| 2XQT_CVM_A_1083 | 9% | 72% | 0.217 | 0.86 | 0.23 | 0.7 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_E_1084 | 9% | 67% | 0.223 | 0.865 | 0.26 | 0.82 | - | - | 0 | 0 | 21% | 1 |
| 2XQT_CVM_A_1088 | 8% | 68% | 0.222 | 0.856 | 0.25 | 0.8 | - | - | 3 | 0 | 21% | 1 |
| 2XQT_CVM_C_1085 | 8% | 77% | 0.243 | 0.876 | 0.21 | 0.6 | - | - | 2 | 0 | 21% | 1 |
| 2XQT_CVM_B_1086 | 8% | 80% | 0.257 | 0.896 | 0.3 | 0.47 | - | - | 0 | 0 | 18% | 1 |
| 2XQT_CVM_E_1086 | 7% | 68% | 0.243 | 0.868 | 0.21 | 0.84 | - | - | 4 | 0 | 21% | 1 |
| 2XQT_CVM_B_1084 | 7% | 76% | 0.237 | 0.858 | 0.21 | 0.63 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_E_1091 | 6% | 71% | 0.232 | 0.835 | 0.24 | 0.73 | - | - | 0 | 0 | 21% | 1 |
| 2XQT_CVM_E_1088 | 6% | 84% | 0.247 | 0.849 | 0.2 | 0.49 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_E_1087 | 6% | 69% | 0.234 | 0.82 | 0.26 | 0.78 | - | - | 3 | 0 | 27% | 1 |
| 2XQT_CVM_A_1090 | 6% | 77% | 0.206 | 0.796 | 0.24 | 0.57 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_B_1087 | 4% | 82% | 0.25 | 0.78 | 0.24 | 0.49 | - | - | 2 | 0 | 30% | 1 |
| 2XQT_CVM_A_1091 | 4% | 74% | 0.293 | 0.831 | 0.23 | 0.66 | - | - | 1 | 0 | 21% | 1 |
| 2XQT_CVM_B_1089 | 3% | 75% | 0.269 | 0.753 | 0.24 | 0.62 | - | - | 4 | 0 | 30% | 1 |
| 2XQT_CVM_D_1086 | 2% | 78% | 0.255 | 0.713 | 0.24 | 0.55 | - | - | 3 | 0 | 24% | 1 |
| 2XQT_CVM_C_1088 | 2% | 76% | 0.266 | 0.712 | 0.29 | 0.56 | - | - | 6 | 0 | 30% | 1 |
| 2XQT_CVM_D_1084 | 2% | 83% | 0.242 | 0.679 | 0.23 | 0.48 | - | - | 2 | 0 | 30% | 1 |
| 2XQT_CVM_A_1086 | 2% | 78% | 0.274 | 0.697 | 0.28 | 0.53 | - | - | 0 | 0 | 27% | 1 |
| 2XQT_CVM_B_1088 | 1% | 74% | 0.304 | 0.697 | 0.21 | 0.67 | - | - | 1 | 0 | 24% | 1 |
| 2XQT_CVM_C_1094 | 1% | 87% | 0.328 | 0.714 | 0.28 | 0.35 | - | - | 0 | 0 | 24% | 1 |
| 2XQT_CVM_D_1085 | 1% | 83% | 0.312 | 0.67 | 0.28 | 0.44 | - | - | 1 | 0 | 30% | 1 |
| 2XQT_CVM_A_1093 | 1% | 74% | 0.287 | 0.644 | 0.3 | 0.58 | - | - | 1 | 0 | 27% | 1 |
| 2XQT_CVM_C_1091 | 1% | 71% | 0.402 | 0.74 | 0.3 | 0.66 | - | - | 3 | 0 | 21% | 1 |
| 2XQT_CVM_E_1092 | 1% | 84% | 0.36 | 0.649 | 0.31 | 0.38 | - | - | 3 | 0 | 24% | 1 |
| 2XQT_CVM_C_1090 | 0% | 75% | 0.57 | 0.417 | 0.23 | 0.62 | - | - | 6 | 0 | 30% | 0.5 |
| 2XQS_CVM_E_106 | 37% | 90% | 0.114 | 0.962 | 0.37 | 0.17 | - | - | 1 | 0 | 18% | 1 |
| 2XQU_CVM_B_108 | 30% | 73% | 0.124 | 0.931 | 0.22 | 0.68 | - | - | 2 | 0 | 21% | 1 |
| 2WIE_CVM_D_106 | 25% | 90% | 0.138 | 0.926 | 0.32 | 0.22 | - | - | 0 | 0 | 18% | 1 |
| 4IUP_CVM_A_303 | 30% | 46% | 0.137 | 0.863 | 0.98 | 0.99 | 1 | 2 | 1 | 0 | 67% | 1 |
| 4IUQ_CVM_B_302 | 30% | 16% | 0.154 | 0.819 | 1.24 | 2.33 | 5 | 20 | 21 | 0 | 100% | 1 |
| 4IUT_CVM_A_302 | 30% | 38% | 0.166 | 0.893 | 0.53 | 1.75 | - | 6 | 3 | 0 | 67% | 1 |














