Ligand validation:2NMP

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 2NMP designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2NMP_PLP_C_500	82%	36%	0.123	0.98	1.2	1.4	1	2	2	0	100%	0.9375
2NMP_PLP_A_500	68%	32%	0.145	0.957	1.56	1.23	2	2	2	0	100%	0.9375
2NMP_PLP_D_500	61%	35%	0.171	0.963	1.21	1.42	2	3	6	0	100%	0.9375
3COG_PLP_C_500	95%	39%	0.076	0.982	1.15	1.29	2	1	0	0	100%	0.9375
2BIE_PLP_B_1361	100%	32%	0.039	0.989	1.43	1.39	4	3	1	0	100%	0.9375
4NOG_PLP_A_501	100%	40%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	23%	0.045	0.993	1.94	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	17%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375
1JF9_PLP_A_500	100%	14%	0.047	0.994	1.28	2.78	1	11	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.