PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 2DYR designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2DYR_PGV_C_267 | 80% | 53% | 0.105 | 0.959 | 0.84 | 0.85 | 1 | 2 | 9 | 0 | 100% | 1 |
| 2DYR_PGV_P_1267 | 79% | 53% | 0.106 | 0.957 | 0.85 | 0.83 | 1 | 1 | 7 | 0 | 100% | 1 |
| 2DYR_PGV_A_525 | 79% | 54% | 0.108 | 0.959 | 0.9 | 0.75 | 2 | 2 | 1 | 0 | 100% | 1 |
| 2DYR_PGV_N_1266 | 78% | 53% | 0.109 | 0.956 | 0.93 | 0.78 | 2 | 3 | 3 | 0 | 100% | 1 |
| 2DYR_PGV_Z_1524 | 12% | 46% | 0.23 | 0.768 | 1.05 | 0.92 | 3 | 2 | 5 | 0 | 100% | 1 |
| 2DYR_PGV_A_524 | 9% | 45% | 0.26 | 0.759 | 1.08 | 0.95 | 3 | 2 | 7 | 0 | 100% | 1 |
| 2DYR_PGV_C_268 | 7% | 44% | 0.277 | 0.751 | 1.25 | 0.82 | 3 | 1 | 1 | 0 | 100% | 1 |
| 2DYR_PGV_P_1268 | 6% | 43% | 0.273 | 0.714 | 1.28 | 0.84 | 4 | 1 | 3 | 0 | 100% | 1 |
| 5IY5_PGV_N_612 | 99% | 43% | 0.041 | 0.994 | 0.86 | 1.23 | 1 | 5 | 1 | 0 | 100% | 1 |
| 3AG1_PGV_C_267 | 99% | 43% | 0.048 | 0.996 | 0.91 | 1.2 | 2 | 6 | 10 | 0 | 100% | 1 |
| 5Z84_PGV_P_303 | 99% | 43% | 0.051 | 0.994 | 0.83 | 1.26 | 2 | 8 | 5 | 0 | 100% | 1 |
| 5X19_PGV_A_608 | 98% | 37% | 0.054 | 0.992 | 0.88 | 1.48 | 2 | 4 | 1 | 0 | 100% | 1 |
| 5X1B_PGV_C_302 | 98% | 49% | 0.047 | 0.982 | 0.92 | 0.94 | 2 | 5 | 0 | 0 | 100% | 1 |
| 6NKN_PGV_A_607 | 98% | 40% | 0.046 | 0.98 | 0.85 | 1.36 | 2 | 5 | 0 | 0 | 100% | 1 |
