Ligand validation:1YBM

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
1YBM_NAP_B_401	87%	15%	0.052	0.968	1.82	1.85	8	14	3	0	100%	1
1YBM_NAP_A_400	75%	15%	0.072	0.952	2.15	1.56	10	12	3	0	100%	1
1XQ6_NAP_A_800	76%	15%	0.071	0.953	1.96	1.76	9	11	5	0	100%	1
2Q46_NAP_A_800	51%	3%	0.103	0.893	2.46	3.34	20	18	0	1	100%	12
2Q4B_NAP_A_400	33%	2%	0.13	0.849	2.76	3.52	21	23	0	1	100%	6
8G50_NAP_A_202	100%	33%	0.013	0.998	1.42	1.24	5	8	2	0	100%	1
6IJX_NAP_A_401	100%	57%	0.014	0.998	0.54	0.92	1	3	4	0	100%	1
2DBQ_NAP_A_401	100%	21%	0.017	0.998	1.43	1.86	9	22	0	0	100%	1
3M4H_NAP_A_500	100%	45%	0.017	0.998	1.13	0.92	5	2	1	0	100%	1
3ASV_NAP_C_303	100%	14%	0.018	0.998	2.26	1.6	11	8	3	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

1YBM | pdb_00001ybm