UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 1Y8Z designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1Y8Z_UDP_B_2001 | 96% | 56% | 0.05 | 0.969 | 0.96 | 0.59 | 1 | 1 | 1 | 0 | 100% | 1 |
| 1Y8Z_UDP_A_3006 | 96% | 56% | 0.055 | 0.969 | 0.96 | 0.6 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1Y6F_UDP_B_601 | 99% | 55% | 0.045 | 0.985 | 0.93 | 0.66 | 1 | 1 | 1 | 0 | 100% | 1 |
| 1XV5_UDP_A_1402 | 98% | 55% | 0.044 | 0.979 | 1.03 | 0.6 | 1 | 1 | 1 | 0 | 100% | 1 |
| 1YA6_UDP_A_2001 | 97% | 53% | 0.051 | 0.975 | 1.11 | 0.59 | 1 | 1 | 0 | 0 | 100% | 1 |
| 1Y6G_UDP_B_2021 | 93% | 58% | 0.065 | 0.966 | 0.86 | 0.61 | 1 | 1 | 2 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |














