UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 1NVK designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 1NVK_UDP_A_700 | 99% | 59% | 0.043 | 0.983 | 0.86 | 0.56 | 1 | - | 0 | 0 | 100% | 1 |
| 1IXY_UDP_A_400 | 100% | 58% | 0.024 | 0.995 | 0.95 | 0.52 | 1 | - | 1 | 0 | 100% | 1 |
| 1SXQ_UDP_A_400 | 100% | 61% | 0.031 | 0.988 | 0.81 | 0.55 | 1 | - | 0 | 0 | 100% | 1 |
| 1M5R_UDP_A_400 | 100% | 59% | 0.033 | 0.989 | 0.86 | 0.56 | 1 | - | 0 | 0 | 100% | 1 |
| 1C3J_UDP_A_353 | 99% | 51% | 0.04 | 0.986 | 1.2 | 0.59 | 4 | - | 0 | 0 | 100% | 1 |
| 1JG6_UDP_A_400 | 99% | 61% | 0.042 | 0.981 | 0.58 | 0.77 | - | 1 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |