GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 1K5G designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1K5G_GDP_J_4250 | 84% | 39% | 0.061 | 0.971 | 1.12 | 1.22 | 1 | 6 | 4 | 0 | 100% | 1 |
| 1K5G_GDP_D_2250 | 80% | 39% | 0.065 | 0.962 | 1.16 | 1.16 | 2 | 5 | 5 | 0 | 100% | 1 |
| 1K5G_GDP_G_3250 | 73% | 41% | 0.08 | 0.959 | 1.04 | 1.15 | 1 | 6 | 5 | 0 | 100% | 1 |
| 1K5G_GDP_A_1250 | 71% | 40% | 0.08 | 0.949 | 1.11 | 1.16 | - | 6 | 5 | 0 | 100% | 1 |
| 5CLL_GDP_C_200 | 99% | 25% | 0.024 | 0.996 | 1.25 | 1.78 | 3 | 7 | 0 | 0 | 100% | 1 |
| 7MO2_GDP_A_301 | 99% | 4% | 0.026 | 0.996 | 3.71 | 1.89 | 17 | 13 | 0 | 0 | 100% | 1 |
| 5CJ2_GDP_B_301 | 98% | 28% | 0.032 | 0.994 | 1.25 | 1.65 | 5 | 9 | 0 | 0 | 100% | 1 |
| 3GJ0_GDP_A_302 | 96% | 32% | 0.041 | 0.989 | 1.14 | 1.56 | 3 | 5 | 0 | 0 | 100% | 1 |
| 3GJ8_GDP_A_302 | 95% | 30% | 0.042 | 0.987 | 1.13 | 1.65 | 2 | 7 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 34% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_F_1001 | 100% | 25% | 0.014 | 0.999 | 1.21 | 1.86 | 4 | 8 | 0 | 0 | 100% | 1 |
| 5V9L_GDP_B_201 | 100% | 35% | 0.013 | 0.998 | 0.98 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_L_401 | 100% | 28% | 0.013 | 0.999 | 1.16 | 1.75 | 3 | 7 | 3 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 28% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
