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OXA-23-JDB/PQ-1-219, 90 min complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.2 M lithium sulfate, 0.1 M HEPES, pH 7.5, 25% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.615 α = 90 b = 82.615 β = 90 c = 86.56 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 59.8 99.9 0.126 0.047 0.999 9.7 13.2 33606
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.214 0.984 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.7 59.76 31798 1808 99.9 0.20301 0.20147 0.2111 0.22963 0.2387 RANDOM 28.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.3 -2.3 4.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 10.363 r_dihedral_angle_1_deg 5.679 r_long_range_B_refined 3.599 r_long_range_B_other 3.598 r_dihedral_angle_2_deg 3.099 r_scangle_other 2.097 r_mcangle_it 1.734 r_mcangle_other 1.734 r_angle_refined_deg 1.255 r_scbond_it 1.202
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 10.363 r_dihedral_angle_1_deg 5.679 r_long_range_B_refined 3.599 r_long_range_B_other 3.598 r_dihedral_angle_2_deg 3.099 r_scangle_other 2.097 r_mcangle_it 1.734 r_mcangle_other 1.734 r_angle_refined_deg 1.255 r_scbond_it 1.202 r_scbond_other 1.201 r_mcbond_it 0.995 r_mcbond_other 0.995 r_angle_other_deg 0.414 r_chiral_restr 0.049 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1963 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing