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Human Mitochondrial Aspartate Aminotransferase complex with PLP at 1.5 Angstrom.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other In lab model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1 M Ammonium Sulfate, 0.05 M Sodium Acetate, 23% PEG-3350, pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.18 α = 101.393 b = 59.168 β = 101.722 c = 67.167 γ = 95.408
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2025-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 48.515 96.8 0.995 6.1 3.7 129693
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.361 0.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.5 48.515 129693 6315 96.755 0.187 0.1855 0.2094 0.2109 17.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.119 -0.545 -0.696 0.833 -0.047 -0.229
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 12.992 r_dihedral_angle_3_deg 10.569 r_dihedral_angle_1_deg 5.287 r_dihedral_angle_2_deg 4.164 r_lrange_it 3.791 r_lrange_other 3.326 r_scangle_it 0.929 r_scangle_other 0.929 r_angle_refined_deg 0.896 r_mcangle_it 0.863
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 12.992 r_dihedral_angle_3_deg 10.569 r_dihedral_angle_1_deg 5.287 r_dihedral_angle_2_deg 4.164 r_lrange_it 3.791 r_lrange_other 3.326 r_scangle_it 0.929 r_scangle_other 0.929 r_angle_refined_deg 0.896 r_mcangle_it 0.863 r_mcangle_other 0.863 r_scbond_it 0.528 r_scbond_other 0.528 r_mcbond_it 0.476 r_mcbond_other 0.476 r_angle_other_deg 0.358 r_nbd_refined 0.195 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.175 r_nbd_other 0.157 r_xyhbond_nbd_refined 0.079 r_symmetry_nbd_refined 0.077 r_symmetry_nbtor_other 0.073 r_symmetry_xyhbond_nbd_refined 0.061 r_chiral_restr 0.048 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6324 Nucleic Acid Atoms Solvent Atoms 994 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing