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Rubredoxin from Pyrococcus Furiosus at 100K, Alanine-2 N terminus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 VAPOR DIFFUSION AGAINST 3.1 M NaCl with 3.6M Na,K PHOSPHATE, pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.15 41.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.864 α = 90 b = 34.328 β = 90 c = 43.433 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.72929 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.825 26.932 93.2 0.049 0.02 0.999 17.5 6.5 38521 9.23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.825 0.891 0.68 0.32 0.753 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 0.825 26.932 38521 1923 77.834 0.132 0.1311 0.1354 0.1477 0.151 RANDOM 6.696
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.476 -1.159 0.682
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.864 r_lrange_it 12.238 r_dihedral_angle_3_deg 11.253 r_lrange_other 9.794 r_rigid_bond_restr 6.702 r_dihedral_angle_1_deg 6.002 r_scangle_it 5.411 r_scangle_other 5.403 r_scbond_it 3.918 r_scbond_other 3.841
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.864 r_lrange_it 12.238 r_dihedral_angle_3_deg 11.253 r_lrange_other 9.794 r_rigid_bond_restr 6.702 r_dihedral_angle_1_deg 6.002 r_scangle_it 5.411 r_scangle_other 5.403 r_scbond_it 3.918 r_scbond_other 3.841 r_mcangle_other 3.099 r_mcangle_it 2.986 r_mcbond_it 2.192 r_mcbond_other 1.961 r_angle_refined_deg 1.887 r_angle_other_deg 0.635 r_symmetry_nbd_refined 0.36 r_nbd_refined 0.258 r_nbtor_refined 0.191 r_symmetry_nbd_other 0.175 r_nbd_other 0.171 r_xyhbond_nbd_refined 0.136 r_symmetry_xyhbond_nbd_refined 0.11 r_chiral_restr 0.097 r_metal_ion_refined 0.087 r_symmetry_nbtor_other 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 413 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction autoPROC data reduction Aimless data scaling HKL2Map phasing