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Glycosyltransferase UGT74AN1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.2M Ammonium sulfate, 0.1M BIS-TRIS, 20%PEG3350
Crystal Properties Matthews coefficient Solvent content 2.44 49.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.8 α = 68.57 b = 62.31 β = 89.61 c = 76.78 γ = 71.15
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193.15 PIXEL DECTRIS PILATUS 6M 2022-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97852 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.84 48.01 97.04 0.99 5.95 3.3 22932
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.84 2.94 0.887
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.84 48.01 21834 1098 97.07 0.22938 0.22706 0.2314 0.2752 0.2762 RANDOM 62.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.29 -2.43 1.25 3.68 -1.01 -2.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.879 r_dihedral_angle_3_deg 15.946 r_dihedral_angle_4_deg 10.715 r_dihedral_angle_1_deg 5.499 r_long_range_B_refined 2.933 r_long_range_B_other 2.933 r_mcangle_it 1.786 r_mcangle_other 1.786 r_scangle_other 1.469 r_angle_refined_deg 1.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.879 r_dihedral_angle_3_deg 15.946 r_dihedral_angle_4_deg 10.715 r_dihedral_angle_1_deg 5.499 r_long_range_B_refined 2.933 r_long_range_B_other 2.933 r_mcangle_it 1.786 r_mcangle_other 1.786 r_scangle_other 1.469 r_angle_refined_deg 1.111 r_mcbond_it 1.026 r_mcbond_other 1.026 r_scbond_it 0.832 r_scbond_other 0.831 r_angle_other_deg 0.741 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6696 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHENIX phasing