9WPS | pdb_00009wps

Solution structure of the complex between the UBA-like domain of mouse HBS1L and ubiquitin

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D_13C,15N-SEPARATED_NOESY	1.0 mM [U-99% 13C; U-99% 15N] mouse HBS1L N-terminal domain, 1.0 mM [U-99% 13C; U-99% 15N] Ubiquitin, 20 mM non sodium phosphate, 100 mM non NaCL, 0.02 % non NaN3	90% H2O/10% D2O	120 mM	6.0	1 atm	298	Bruker AVANCE 800
2	3D CBCA(CO)NH,HNCACB	1.0 mM [U-99% 13C; U-99% 15N] mouse HBS1L N-terminal domain, 1.0 mM [U-99% 13C; U-99% 15N] Ubiquitin, 20 mM non sodium phosphate, 100 mM non NaCL, 0.02 % non NaN3	90% H2O/10% D2O	120 mM	6.0	1 atm	298	Bruker AVANCE 600
3	3D HCCH-COSY,TOCSY	1.0 mM [U-99% 13C; U-99% 15N] mouse HBS1L N-terminal domain, 1.0 mM [U-99% 13C; U-99% 15N] Ubiquitin, 20 mM non sodium phosphate, 100 mM non NaCL, 0.02 % non NaN3	90% H2O/10% D2O	120 mM	6.0	1 atm	298	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	Amber	24	Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2	structure calculation	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	KUJIRA	0.863	N. Kobayashi, T. Kigawa, S. Yokoyama
4	peak picking	NMRView	5.0.4	Johnson, One Moon Scientific
5	processing	NMRPipe	2007	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	geometry optimization	TALOS	2007	Cornilescu, Delaglio and Bax