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Estrogen Receptor Alpha Ligand Binding Domain Y537S Mutant in Complex with Compound No.33 and GRIP Peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7Y8G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295.15 20% (w/v) PEG 3350, 0.25 M Ammonium sulfate, and 0.1 M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.21 44.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.585 α = 90 b = 101.875 β = 90 c = 195.654 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2025-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL10U2 1 SSRF BL10U2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.9 0.9993 28.88 12.46 38618
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 0.5056
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 49.34 36573 2001 99.37 0.19283 0.19039 0.2052 0.23785 0.2453 RANDOM 43.208
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 1.17 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.072 r_dihedral_angle_4_deg 21.404 r_dihedral_angle_3_deg 14.967 r_long_range_B_refined 8.488 r_long_range_B_other 8.488 r_scangle_other 6.628 r_dihedral_angle_1_deg 6.081 r_mcangle_it 4.976 r_mcangle_other 4.976 r_scbond_it 4.448
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.072 r_dihedral_angle_4_deg 21.404 r_dihedral_angle_3_deg 14.967 r_long_range_B_refined 8.488 r_long_range_B_other 8.488 r_scangle_other 6.628 r_dihedral_angle_1_deg 6.081 r_mcangle_it 4.976 r_mcangle_other 4.976 r_scbond_it 4.448 r_scbond_other 4.447 r_mcbond_it 3.664 r_mcbond_other 3.644 r_angle_refined_deg 1.546 r_angle_other_deg 1.37 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3935 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction autoPX data reduction PHASER phasing