SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 200 uM [rRTPs (3',4',5',5''), and rYTPs (5,3',4',5',5'')] 5BSL3.2 Apical stem loop, 100 % [U-2H] D2O | 100% D2O | 5 mM | 6.5 | 1 atm | 303 | Bruker AVANCE II 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE II | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | X-PLOR NIH | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 10240 |
| Conformers Submitted Total Number | 15 |
| Representative Model | 1 (minimized average structure) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | Bruker Biospin | |
| 2 | chemical shift assignment | NMRViewJ | johnson, one moon scientific | |
| 3 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 4 | peak picking | NMRView | Johnson, One Moon Scientific | |
| 5 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
