☰ Navigation Tabs
Crystal structure of AetF-S523A in complex with FAD and L-tryptophan
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8JZ3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 30% PEG 6000, 100 mM Tris pH 8.0, 10 mg/mL AetF-S523A (2 mM Trp, 5 mM DTT)
Crystal Properties Matthews coefficient Solvent content 2.07 40.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.08 α = 90 b = 75.036 β = 90 c = 143.213 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2024-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE TPS 07A 0.97621 NSRRC TPS 07A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 25 98.3 0.054 0.062 0.031 0.993 10.5 4.2 59211
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.87 94.1 0.494 0.565 0.269 0.905 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.81 24.65 56083 3072 98.05 0.19286 0.18964 0.25361 0.274 RANDOM 42.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.91 -3.35 -2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.561 r_dihedral_angle_3_deg 16.152 r_dihedral_angle_4_deg 13.659 r_dihedral_angle_1_deg 7.362 r_long_range_B_refined 7.332 r_long_range_B_other 7.33 r_scangle_other 5.793 r_mcangle_it 4.683 r_mcangle_other 4.683 r_scbond_it 3.923
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.561 r_dihedral_angle_3_deg 16.152 r_dihedral_angle_4_deg 13.659 r_dihedral_angle_1_deg 7.362 r_long_range_B_refined 7.332 r_long_range_B_other 7.33 r_scangle_other 5.793 r_mcangle_it 4.683 r_mcangle_other 4.683 r_scbond_it 3.923 r_scbond_other 3.923 r_mcbond_it 3.467 r_mcbond_other 3.465 r_angle_refined_deg 1.536 r_angle_other_deg 1.311 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5213 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data reduction PHASER phasing PDB_EXTRACT data extraction