Experiment: 9VUY

NMR Structure of LC3B in complex with HBx BH3-like motif

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
2	3D HNCO	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
3	3D HNCA	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
4	3D CBCA(CO)NH	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
5	3D HNCACB	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
17	3D HBHA(CO)NH	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
16	3D CC(CO)NH	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
15	3D 1H-15N NOESY-HSQC	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
14	2D 1H-13C HSQC aliphatic	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
13	3D HCCH-TOCSY aliphatic	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
12	3D CCH-TOCSY aliphatic	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
11	3D 1H-13C NOESY-HSQC aliphatic	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
52	2D 1H-13C HSQC aromatic	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
51	3D HCCH-COSY aromatic	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
27	3D 1H-13C NOESY-HSQC aromatic	0.4 mM [U-13C; U-15N] LC3B, 0.5 mM [U-13C; U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
10	2D 1H-15N HSQC	0.4 mM [U-15N] LC3B, 0.5 mM [U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
9	3D 1H-15N NOESY-HSQC	0.4 mM [U-15N] LC3B, 0.5 mM [U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
8	2D 1H-15N HSQC	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
7	3D HNCO	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
6	3D HNCA	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
26	3D CBCA(CO)NH	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
25	3D HBHA(CO)NH	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
24	3D CC(CO)NH	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
23	3D 1H-15N NOESY-HSQC	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
22	2D 1H-13C HSQC	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
21	3D HCCH-TOCSY	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
20	3D 1H-13C NOESY-HSQC aromatic	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
19	3D 1H-13C NOESY-HSQC	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
18	2D 13C,15N-[F1,F2]-filtered NOESY	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
32	2D 13C,15N-[F2]-filtered NOESY	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
31	2D 13C,15N-[F2]-filtered TOCSY	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
30	3D [F1] 13C-filtered [F3] 13C-edited NOESY-HSQC	0.5 mM [U-13, U-15N] LC3B, 0.625 mM 1H HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
29	2D 1H-15N HSQC	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
28	3D BEST-HNCO	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
38	3D BEST-HNCACO	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
37	3D BEST-HNCA	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
36	3D BEST-HNCOCA	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
35	3D BEST-HNCOCACB	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
34	3D BEST-HNCACB	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
33	3D HBHA(CO)NH	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
43	3D CC(CO)NH	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
42	3D 1H-15N NOESY-HSQC	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
41	3D HNHA	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
40	2D 1H-13C HSQC aliphatic	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
39	3D HCCH-TOCSY aliphatic	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
47	3D CCH-TOCSY aliphatic	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
46	3D 1H-13C NOESY-HSQC aliphatic	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
45	2D 1H-13C HSQC aromatic	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
44	3D HCCH-TOCSY aromatic	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600
50	3D 1H-13C NOESY-HSQC aromatic	0.8 mM 1H LC3B, 0.4 mM [U-13, U-15N] HBx BH3-like motif	95% H2O/5% D2O	50 mM	7.0	1 atm	298	Bruker AVANCE III HD 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	600

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing		CYANA
torsion angle dynamics		NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	processing	MddNMR		V. Orekhov, V. Jaravine, M. Mayzel, and K. Kazimierczuk
2	data analysis	MagRO-NMRView		Naohiro, Kobayashi
3	structure calculation	CYANA	3.98	Guntert, Mumenthaler and Wuthrich

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9VUY | pdb_00009vuy

NMR Structure of LC3B in complex with HBx BH3-like motif