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Crystal Structure of TEAD2 in a covalent complex with LC-TEAD01
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 Sodium Formate 2.0M HEPES pH 7.2 - 8.0
Crystal Properties Matthews coefficient Solvent content 2.54 51.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.916 α = 90 b = 61.552 β = 117.52 c = 79.726 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2025-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.97853 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.66 70.7 98.4 0.169 0.188 0.081 0.99 7.5 4.9 15111
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.66 2.8 97.9 0.792 0.883 0.383 0.752 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.66 70.7 14361 740 97.97 0.20997 0.20765 0.2138 0.25628 0.2559 RANDOM 52.844
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.71 1.85 -1.57 -2.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.877 r_dihedral_angle_2_deg 13.189 r_long_range_B_refined 12.181 r_long_range_B_other 12.181 r_scangle_other 8.596 r_mcangle_it 7.063 r_mcangle_other 7.061 r_dihedral_angle_1_deg 5.846 r_scbond_it 5.374 r_scbond_other 5.374
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.877 r_dihedral_angle_2_deg 13.189 r_long_range_B_refined 12.181 r_long_range_B_other 12.181 r_scangle_other 8.596 r_mcangle_it 7.063 r_mcangle_other 7.061 r_dihedral_angle_1_deg 5.846 r_scbond_it 5.374 r_scbond_other 5.374 r_mcbond_it 4.44 r_mcbond_other 4.439 r_angle_refined_deg 1.178 r_angle_other_deg 0.378 r_chiral_restr 0.047 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3308 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing PDB_EXTRACT data extraction autoPROC data reduction