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Carbonyl reductase SxPR WT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BMS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.2 M Sodium acetate trihydrate
0.1 M TRIS hydrochloride pH 8.5
30% w/v Polyethylene glycol 4,000
Crystal Properties Matthews coefficient Solvent content 4.01 69.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.312 α = 90 b = 80.34 β = 90 c = 131.694 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 1.54184 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 43.01 98.8 0.071 9.2 5.4 35589
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.9 0.663
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.86 43.01 33890 1698 98.24 0.22263 0.22163 0.2349 0.24268 0.2525 RANDOM 21.331
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -9.79 -8.77 18.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.866 r_dihedral_angle_4_deg 21.76 r_dihedral_angle_3_deg 14.944 r_dihedral_angle_1_deg 5.936 r_long_range_B_refined 2.551 r_long_range_B_other 2.549 r_scangle_other 1.497 r_mcangle_it 1.483 r_mcangle_other 1.483 r_angle_refined_deg 1.422
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.866 r_dihedral_angle_4_deg 21.76 r_dihedral_angle_3_deg 14.944 r_dihedral_angle_1_deg 5.936 r_long_range_B_refined 2.551 r_long_range_B_other 2.549 r_scangle_other 1.497 r_mcangle_it 1.483 r_mcangle_other 1.483 r_angle_refined_deg 1.422 r_mcbond_it 0.956 r_mcbond_other 0.956 r_scbond_it 0.938 r_scbond_other 0.938 r_angle_other_deg 0.811 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1818 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction XDS data scaling PHASER phasing