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EGFR T790M/L858R mutant in complex with covalent inhibitor TAS-2913
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Implemented by subcontractors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 8.0% v/v ethylene glycol; 0.1M HEPES pH 7.25; 10% w/v PEG 10K
Crystal Properties Matthews coefficient Solvent content 3.46 64.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.694 α = 90 b = 144.694 β = 90 c = 144.694 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X CdTe 16M 2024-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.8856 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.686 102.314 97.1 0.207 0.207 17 41.6 13818
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.686 2.732 100 4.748 4.748 1.3 43
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.69 102.31 13095 714 97.04 0.214 0.21155 0.2132 0.25779 0.2559 RANDOM 71.536
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.771 r_dihedral_angle_3_deg 12.552 r_dihedral_angle_4_deg 10.399 r_long_range_B_refined 8.009 r_long_range_B_other 8.007 r_mcangle_it 6.361 r_mcangle_other 6.359 r_dihedral_angle_1_deg 6.243 r_scangle_other 4.983 r_mcbond_it 3.768
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.771 r_dihedral_angle_3_deg 12.552 r_dihedral_angle_4_deg 10.399 r_long_range_B_refined 8.009 r_long_range_B_other 8.007 r_mcangle_it 6.361 r_mcangle_other 6.359 r_dihedral_angle_1_deg 6.243 r_scangle_other 4.983 r_mcbond_it 3.768 r_mcbond_other 3.757 r_scbond_it 2.949 r_scbond_other 2.949 r_angle_refined_deg 1.328 r_angle_other_deg 1.095 r_chiral_restr 0.053 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2408 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 30
Software Software Software Name Purpose autoPROC data reduction XDS data reduction autoPROC data scaling Aimless data scaling REFMAC refinement XDS data scaling PDB_EXTRACT data extraction