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Light driven CO2 reduction by fluorescent protein mRuby-CO2M1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9V56
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M NH4HCO3, 0.2M (NH4)2SO4, 0.1M Bistris pH6.5, 24%PEG3350
Crystal Properties Matthews coefficient Solvent content 2.07 40.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.999 α = 90 b = 95.662 β = 90 c = 31.329 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2024-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.97918 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 38.93 100 0.998 8.5 12 21446
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.79 0.673
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.74 38.93 20276 1084 99.75 0.2186 0.21762 0.2384 0.23675 0.2509 RANDOM 21.813
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.84 0.61 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.936 r_dihedral_angle_2_deg 7.978 r_dihedral_angle_1_deg 7.361 r_long_range_B_refined 4.427 r_long_range_B_other 4.422 r_scangle_other 3.173 r_mcangle_it 2.061 r_mcangle_other 2.06 r_scbond_it 1.946 r_scbond_other 1.946
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.936 r_dihedral_angle_2_deg 7.978 r_dihedral_angle_1_deg 7.361 r_long_range_B_refined 4.427 r_long_range_B_other 4.422 r_scangle_other 3.173 r_mcangle_it 2.061 r_mcangle_other 2.06 r_scbond_it 1.946 r_scbond_other 1.946 r_angle_refined_deg 1.419 r_mcbond_it 1.307 r_mcbond_other 1.307 r_angle_other_deg 0.481 r_chiral_restr 0.069 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1701 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement Aimless data scaling xia2 data reduction MOLREP phasing PDB_EXTRACT data extraction