☰ Navigation Tabs
crystal structure of ACAT2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WL4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 10% v/v 2-Propanol, 0.1 M BICINE, 30% w/v Polyethylene glycol 1,500
Crystal Properties Matthews coefficient Solvent content 2.8 56.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.588 α = 90 b = 127.498 β = 90 c = 131.224 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER2 X 1M 2025-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 0.97 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.17 30 93.4 0.124 0.141 0.065 11.6 4.6 93913
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.17 2.26 72.6 0.24 0.988 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WL4 2.17 28.27 87971 4872 91.99 0.22829 0.22607 0.2347 0.26835 0.2709 RANDOM 49.211
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -3.16 3.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.588 r_dihedral_angle_1_deg 6.937 r_dihedral_angle_2_deg 6.68 r_long_range_B_refined 6.323 r_long_range_B_other 6.322 r_scangle_other 4.616 r_mcangle_it 3.85 r_mcangle_other 3.85 r_scbond_it 2.916 r_scbond_other 2.912
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.588 r_dihedral_angle_1_deg 6.937 r_dihedral_angle_2_deg 6.68 r_long_range_B_refined 6.323 r_long_range_B_other 6.322 r_scangle_other 4.616 r_mcangle_it 3.85 r_mcangle_other 3.85 r_scbond_it 2.916 r_scbond_other 2.912 r_mcbond_it 2.54 r_mcbond_other 2.539 r_angle_refined_deg 1.226 r_angle_other_deg 0.423 r_chiral_restr 0.056 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11484 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling HKL-2000 data reduction PDB_EXTRACT data extraction MOLREP phasing