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Klebsiella pneumoniae maltohexaose-producing alpha-amylase, terbium derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.2 293 8% polyethylene glycol 3000,
4% polyethylene glycol 3350,
40 mM sodium thiocyanate
Crystal Properties Matthews coefficient Solvent content 2.22 44.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.884 α = 90 b = 107.496 β = 96.595 c = 82.083 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2012-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.64894 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 100 98.6 0.208 14 14.4 39283
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 0.895 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.699 46.898 35184 1761 98.737 0.167 0.1644 0.1703 0.2195 0.22 31.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.003 -0.018 0.029 -0.021
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.403 r_dihedral_angle_6_deg 13.887 r_dihedral_angle_1_deg 6.603 r_lrange_it 3.598 r_lrange_other 3.586 r_dihedral_angle_2_deg 3.147 r_mcangle_it 2.101 r_mcangle_other 2.101 r_scangle_it 1.898 r_scangle_other 1.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.403 r_dihedral_angle_6_deg 13.887 r_dihedral_angle_1_deg 6.603 r_lrange_it 3.598 r_lrange_other 3.586 r_dihedral_angle_2_deg 3.147 r_mcangle_it 2.101 r_mcangle_other 2.101 r_scangle_it 1.898 r_scangle_other 1.897 r_mcbond_it 1.186 r_mcbond_other 1.186 r_scbond_it 1.062 r_scbond_other 1.062 r_angle_refined_deg 0.95 r_angle_other_deg 0.361 r_nbd_refined 0.195 r_symmetry_nbd_other 0.19 r_nbtor_refined 0.177 r_nbd_other 0.166 r_xyhbond_nbd_refined 0.141 r_metal_ion_refined 0.11 r_symmetry_xyhbond_nbd_refined 0.105 r_symmetry_nbd_refined 0.079 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.045 r_symmetry_xyhbond_nbd_other 0.035 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10346 Nucleic Acid Atoms Solvent Atoms 438 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing