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Ovorubin from the golden apple snail (Pomacea canaliculata)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Other AF-J7I2T6-F1 other Other AF-J7HZ90-F1 other Other AF-A0A2T7NVP5-F1 other Other AF-A0A2T7NVP6-F1
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.085 f_angle_d 0.609 f_chiral_restr 0.048 f_bond_d 0.006 f_plane_restr 0.004
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 336633 Reported Resolution (Å) 2.12 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value 51.4 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 400 Maximum Defocus (nm) 1400 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 215000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.2.1 IMAGE ACQUISITION EPU 3.3 CTF CORRECTION cryoSPARC 4.6.0 MODEL FITTING Coot 0.9.8.93 INITIAL EULER ASSIGNMENT cryoSPARC 4.6.0 FINAL EULER ASSIGNMENT cryoSPARC 4.6.0 CLASSIFICATION cryoSPARC 4.2.1 RECONSTRUCTION cryoSPARC 4.6.0 MODEL REFINEMENT PHENIX 1.21.2_5419
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1621962