☰ Navigation Tabs
4-alpha-glucanotransferase from Thermus thermophilus STB20
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FP8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 293.15 0.1M Bis-Tris pH 5.5, 35% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.06 40.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 197.783 α = 90 b = 41.391 β = 98.26 c = 58.458 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2024-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.979183 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40.5 98.3 0.12 8.9 4.1 27285
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 8.91 0.136
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 40.5 25946 1333 98.28 0.26675 0.26431 0.262 0.31558 0.3114 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 29.91 0.6 -7.07 -22.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.054 r_dihedral_angle_1_deg 5.972 r_dihedral_angle_2_deg 3.874 r_long_range_B_refined 2.709 r_long_range_B_other 2.696 r_mcangle_it 1.394 r_mcangle_other 1.393 r_scangle_other 1.187 r_angle_refined_deg 0.96 r_mcbond_it 0.817
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.054 r_dihedral_angle_1_deg 5.972 r_dihedral_angle_2_deg 3.874 r_long_range_B_refined 2.709 r_long_range_B_other 2.696 r_mcangle_it 1.394 r_mcangle_other 1.393 r_scangle_other 1.187 r_angle_refined_deg 0.96 r_mcbond_it 0.817 r_mcbond_other 0.817 r_scbond_it 0.677 r_scbond_other 0.677 r_angle_other_deg 0.363 r_chiral_restr 0.048 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4033 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction PHASER phasing