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T200H Carbonic Anhydrase II pH 7.8 5 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293.15 1.3M of Sodium Citrate
50mM Tris-HCl pH 7.8
Crystal Properties Matthews coefficient Solvent content 2.04 39.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.161 α = 90 b = 41.401 β = 104.622 c = 72.682 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2024-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97933 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 50 99.9 0.092 0.1 0.039 0.999 22.37 6 67198
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.27 98.9 0.51 0.591 0.293 0.809 1.8 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.25 29.058 67183 3427 99.822 0.145 0.1432 0.1516 0.1704 0.1743 12.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.024 0.063 -0.122 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.445 r_dihedral_angle_3_deg 11.248 r_lrange_it 10.55 r_lrange_other 9.989 r_scangle_it 7.605 r_scangle_other 7.588 r_dihedral_angle_2_deg 7.525 r_dihedral_angle_1_deg 6.878 r_mcangle_other 5.374 r_mcangle_it 5.364
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.445 r_dihedral_angle_3_deg 11.248 r_lrange_it 10.55 r_lrange_other 9.989 r_scangle_it 7.605 r_scangle_other 7.588 r_dihedral_angle_2_deg 7.525 r_dihedral_angle_1_deg 6.878 r_mcangle_other 5.374 r_mcangle_it 5.364 r_scbond_it 5.247 r_scbond_other 5.231 r_rigid_bond_restr 4.047 r_mcbond_it 3.797 r_mcbond_other 3.749 r_angle_refined_deg 1.911 r_angle_other_deg 0.686 r_nbd_other 0.24 r_nbd_refined 0.204 r_symmetry_nbd_other 0.198 r_symmetry_nbd_refined 0.198 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.133 r_symmetry_xyhbond_nbd_refined 0.132 r_chiral_restr 0.107 r_symmetry_nbtor_other 0.09 r_metal_ion_refined 0.054 r_xyhbond_nbd_other 0.041 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2051 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing