Experiment: 9TZ4

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
in silico model	AlphaFold

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		291	30% PEG 200, 0.1 M MES pH 6.5 and 0.1 M sodium acetate

Crystal Properties
Matthews coefficient	Solvent content
1.88	34.49

Symmetry
Space Group	P 21 3

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 4M		2025-07-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID30B	0.8731	ESRF	ID30B

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.1	52.6	97.2	0.038	13	17.5		2916

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.1	2.18	100		0.383

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.101	37.194	2886	146	96.522	0.254	0.2538	0.2607	0.2667	0.2694	60.565

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	21.261
r_dihedral_angle_2_deg	15.313
r_dihedral_angle_6_deg	15.041
r_lrange_it	9.128
r_lrange_other	9.125
r_mcangle_it	5.983
r_mcangle_other	5.972
r_scangle_it	5.67
r_scangle_other	5.661
r_dihedral_angle_1_deg	4.421

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	21.261
r_dihedral_angle_2_deg	15.313
r_dihedral_angle_6_deg	15.041
r_lrange_it	9.128
r_lrange_other	9.125
r_mcangle_it	5.983
r_mcangle_other	5.972
r_scangle_it	5.67
r_scangle_other	5.661
r_dihedral_angle_1_deg	4.421
r_mcbond_it	3.641
r_mcbond_other	3.641
r_scbond_it	3.431
r_scbond_other	3.423
r_angle_refined_deg	1.219
r_angle_other_deg	0.465
r_symmetry_nbd_refined	0.254
r_nbd_refined	0.239
r_symmetry_nbd_other	0.207
r_nbd_other	0.177
r_nbtor_refined	0.165
r_xyhbond_nbd_refined	0.135
r_symmetry_nbtor_other	0.082
r_chiral_restr	0.052
r_symmetry_xyhbond_nbd_refined	0.043
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	433
Nucleic Acid Atoms
Solvent Atoms	1
Heterogen Atoms

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9TZ4 | pdb_00009tz4