9TL2 | pdb_00009tl2

TAF15 amyloid filament fold C variant 2


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg12.31
r_dihedral_angle_3_deg11.885
r_lrange_it11.885
r_lrange_other11.878
r_scangle_it10.081
r_scangle_other10.071
r_dihedral_angle_1_deg6.722
r_scbond_it5.989
r_scbond_other5.981
r_mcangle_it4.581
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg12.31
r_dihedral_angle_3_deg11.885
r_lrange_it11.885
r_lrange_other11.878
r_scangle_it10.081
r_scangle_other10.071
r_dihedral_angle_1_deg6.722
r_scbond_it5.989
r_scbond_other5.981
r_mcangle_it4.581
r_mcangle_other4.578
r_mcbond_it2.853
r_mcbond_other2.843
r_angle_refined_deg1.566
r_angle_other_deg0.615
r_nbd_refined0.241
r_nbd_other0.226
r_symmetry_nbd_other0.204
r_nbtor_refined0.202
r_symmetry_nbd_refined0.145
r_xyhbond_nbd_refined0.108
r_chiral_restr0.082
r_symmetry_nbtor_other0.082
r_symmetry_xyhbond_nbd_refined0.081
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles2600
Reported Resolution (Å)2.82
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.83
Angular Rotation-1.48
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeTFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)1500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION136044