9TKL | pdb_00009tkl

TAF15 amyloid filament fold C variant 1 doublet


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it13.596
r_lrange_other13.591
r_dihedral_angle_3_deg12.549
r_scangle_it11.193
r_scangle_other11.187
r_dihedral_angle_6_deg10.995
r_mcangle_it6.707
r_mcangle_other6.703
r_dihedral_angle_1_deg6.49
r_scbond_it6.425
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it13.596
r_lrange_other13.591
r_dihedral_angle_3_deg12.549
r_scangle_it11.193
r_scangle_other11.187
r_dihedral_angle_6_deg10.995
r_mcangle_it6.707
r_mcangle_other6.703
r_dihedral_angle_1_deg6.49
r_scbond_it6.425
r_scbond_other6.419
r_mcbond_it4.532
r_mcbond_other4.514
r_angle_refined_deg1.437
r_angle_other_deg0.537
r_xyhbond_nbd_refined0.228
r_symmetry_nbd_refined0.217
r_symmetry_nbd_other0.212
r_nbd_refined0.205
r_nbtor_refined0.202
r_nbd_other0.199
r_symmetry_nbtor_other0.088
r_chiral_restr0.07
r_symmetry_xyhbond_nbd_refined0.064
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_bond_other_d
r_ncsr_local_group_1
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles9846
Reported Resolution (Å)2.6
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC2
Axial Rise4.79
Angular Rotation-1.44
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeTFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)1500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION136044