9TKK | pdb_00009tkk

TAF15 amyloid filament fold C variant 1


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it13.132
r_lrange_other13.123
r_dihedral_angle_6_deg13.063
r_scangle_it11.103
r_scangle_other11.09
r_dihedral_angle_3_deg10.898
r_scbond_it7.257
r_scbond_other7.245
r_dihedral_angle_1_deg6.413
r_mcangle_it5.192
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it13.132
r_lrange_other13.123
r_dihedral_angle_6_deg13.063
r_scangle_it11.103
r_scangle_other11.09
r_dihedral_angle_3_deg10.898
r_scbond_it7.257
r_scbond_other7.245
r_dihedral_angle_1_deg6.413
r_mcangle_it5.192
r_mcangle_other5.187
r_mcbond_it3.999
r_mcbond_other3.969
r_angle_refined_deg1.513
r_angle_other_deg0.527
r_nbd_refined0.225
r_symmetry_nbd_other0.209
r_nbtor_refined0.196
r_nbd_other0.191
r_xyhbond_nbd_refined0.184
r_symmetry_nbd_refined0.139
r_symmetry_nbtor_other0.081
r_chiral_restr0.078
r_symmetry_xyhbond_nbd_refined0.055
r_bond_refined_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.001
r_bond_other_d
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles71272
Reported Resolution (Å)2.38
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.83
Angular Rotation-1.52
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeTFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)1500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION136044