9TKI | pdb_00009tki

TAF15 amyloid filament fold E variant 2


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg13.133
r_lrange_it10.991
r_lrange_other10.967
r_dihedral_angle_3_deg10.165
r_scangle_it8.494
r_scangle_other8.486
r_dihedral_angle_1_deg6.736
r_mcangle_other5.439
r_mcangle_it5.414
r_scbond_it5.044
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg13.133
r_lrange_it10.991
r_lrange_other10.967
r_dihedral_angle_3_deg10.165
r_scangle_it8.494
r_scangle_other8.486
r_dihedral_angle_1_deg6.736
r_mcangle_other5.439
r_mcangle_it5.414
r_scbond_it5.044
r_scbond_other5.038
r_mcbond_it3.362
r_mcbond_other3.344
r_angle_refined_deg1.038
r_angle_other_deg0.399
r_symmetry_nbd_other0.212
r_xyhbond_nbd_refined0.208
r_nbtor_refined0.196
r_nbd_other0.194
r_nbd_refined0.182
r_symmetry_xyhbond_nbd_refined0.17
r_symmetry_nbd_refined0.105
r_symmetry_nbtor_other0.08
r_chiral_restr0.057
r_bond_refined_d0.005
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_bond_other_d
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles5728
Reported Resolution (Å)2.39
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.84
Angular Rotation-1.82
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeTFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION478902