9TKH | pdb_00009tkh

TAF15 amyloid filament fold E variant 1


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg12.096
r_lrange_other8.889
r_lrange_it8.878
r_dihedral_angle_3_deg8.819
r_dihedral_angle_1_deg6.689
r_scangle_it6.589
r_scangle_other6.583
r_mcangle_other4.203
r_mcangle_it4.163
r_scbond_it3.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg12.096
r_lrange_other8.889
r_lrange_it8.878
r_dihedral_angle_3_deg8.819
r_dihedral_angle_1_deg6.689
r_scangle_it6.589
r_scangle_other6.583
r_mcangle_other4.203
r_mcangle_it4.163
r_scbond_it3.99
r_scbond_other3.985
r_mcbond_it2.502
r_mcbond_other2.434
r_angle_refined_deg1.106
r_angle_other_deg0.403
r_symmetry_nbd_other0.199
r_nbd_other0.191
r_nbtor_refined0.182
r_nbd_refined0.169
r_symmetry_nbd_refined0.098
r_symmetry_xyhbond_nbd_refined0.085
r_symmetry_nbtor_other0.072
r_xyhbond_nbd_refined0.069
r_chiral_restr0.059
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_gen_planes_other0.001
r_bond_other_d
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles129198
Reported Resolution (Å)2.05
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.83
Angular Rotation-1.84
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeTFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION478902