9TKG | pdb_00009tkg

TAF15 amyloid filament fold F


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg12.091
r_dihedral_angle_3_deg9.179
r_lrange_other7.965
r_lrange_it7.958
r_dihedral_angle_1_deg7.515
r_scangle_it6.374
r_scangle_other6.367
r_mcangle_it4.194
r_mcangle_other4.193
r_scbond_it3.945
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg12.091
r_dihedral_angle_3_deg9.179
r_lrange_other7.965
r_lrange_it7.958
r_dihedral_angle_1_deg7.515
r_scangle_it6.374
r_scangle_other6.367
r_mcangle_it4.194
r_mcangle_other4.193
r_scbond_it3.945
r_scbond_other3.939
r_mcbond_it2.509
r_mcbond_other2.505
r_angle_refined_deg1.481
r_angle_other_deg0.51
r_nbd_refined0.216
r_nbd_other0.205
r_symmetry_nbd_other0.198
r_nbtor_refined0.194
r_symmetry_nbd_refined0.139
r_xyhbond_nbd_refined0.11
r_symmetry_nbtor_other0.08
r_symmetry_xyhbond_nbd_refined0.078
r_chiral_restr0.071
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_gen_planes_other0.002
r_bond_other_d
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles40188
Reported Resolution (Å)2.08
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.8
Angular Rotation-1.45
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION159941