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G14 variant of 57aBi scaffold crystallized in I212121
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AVC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 291 15% (v/v) ethanol,
0.2M Lithium sulfate,
0.1M Sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.98 58.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.701 α = 90 b = 72.23 β = 90 c = 79.238 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 39.65 60.4 0.078 0.031 0.998 12.9 6.3 26258
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.57 9 1.028 0.441 0.648
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.364 39.65 26258 1256 60.351 0.18 0.1782 0.1787 0.2103 0.2103 RANDOM 24.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.224 0.09 0.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.436 r_dihedral_angle_3_deg 12.541 r_lrange_it 8.263 r_lrange_other 8.145 r_dihedral_angle_2_deg 6.583 r_dihedral_angle_1_deg 6.345 r_scangle_it 5.551 r_scangle_other 5.449 r_mcangle_it 4.426 r_mcangle_other 4.425
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.436 r_dihedral_angle_3_deg 12.541 r_lrange_it 8.263 r_lrange_other 8.145 r_dihedral_angle_2_deg 6.583 r_dihedral_angle_1_deg 6.345 r_scangle_it 5.551 r_scangle_other 5.449 r_mcangle_it 4.426 r_mcangle_other 4.425 r_scbond_it 3.716 r_scbond_other 3.582 r_mcbond_it 2.925 r_mcbond_other 2.923 r_angle_refined_deg 1.821 r_angle_other_deg 0.612 r_xyhbond_nbd_refined 0.22 r_nbd_refined 0.204 r_symmetry_nbd_other 0.194 r_nbd_other 0.188 r_symmetry_nbd_refined 0.185 r_nbtor_refined 0.177 r_symmetry_xyhbond_nbd_refined 0.162 r_chiral_restr 0.091 r_symmetry_nbtor_other 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1087 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement XDS data reduction STARANISO data scaling PHASER phasing