9THN | pdb_00009thn

TAF15 amyloid filament fold B variant 2


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg12.018
r_dihedral_angle_3_deg8.318
r_dihedral_angle_1_deg6.602
r_lrange_other5.098
r_lrange_it5.068
r_scangle_it3.523
r_scangle_other3.519
r_mcangle_it2.345
r_mcangle_other2.345
r_scbond_it1.987
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg12.018
r_dihedral_angle_3_deg8.318
r_dihedral_angle_1_deg6.602
r_lrange_other5.098
r_lrange_it5.068
r_scangle_it3.523
r_scangle_other3.519
r_mcangle_it2.345
r_mcangle_other2.345
r_scbond_it1.987
r_scbond_other1.976
r_mcbond_it1.337
r_mcbond_other1.335
r_angle_refined_deg0.956
r_angle_other_deg0.347
r_nbd_other0.204
r_symmetry_nbd_other0.196
r_nbd_refined0.191
r_nbtor_refined0.188
r_symmetry_nbd_refined0.123
r_xyhbond_nbd_refined0.119
r_symmetry_xyhbond_nbd_refined0.085
r_symmetry_nbtor_other0.08
r_chiral_restr0.049
r_gen_planes_refined0.003
r_bond_refined_d0.002
r_gen_planes_other0.001
r_bond_other_d
Sample
TATA-binding protein-associated factor 2N
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles21609
Reported Resolution (Å)1.97
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.8
Angular Rotation-1.44
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeTFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)300
Maximum Defocus (nm)1300
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.0.1
RECONSTRUCTIONRELION5
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION850270