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From KRASG12D to pan-KRAS inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.1M sodium acetate pH 5.5, 30-35% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.2 44.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.88 α = 90 b = 53.803 β = 90 c = 88.188 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER R 1M 2021-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 15.34 99.1 0.076 13.6 4.6 26233
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 0.555
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.6 15.34 24192 1257 98.8 0.19273 0.1909 0.2015 0.22745 0.2346 RANDOM 13.993
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 0.46 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.045 r_dihedral_angle_4_deg 18.339 r_dihedral_angle_3_deg 14.688 r_dihedral_angle_1_deg 12.619 r_long_range_B_refined 3.879 r_long_range_B_other 3.784 r_angle_refined_deg 1.573 r_scbond_other 1.052 r_scbond_it 1.039 r_mcbond_it 0.671
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.045 r_dihedral_angle_4_deg 18.339 r_dihedral_angle_3_deg 14.688 r_dihedral_angle_1_deg 12.619 r_long_range_B_refined 3.879 r_long_range_B_other 3.784 r_angle_refined_deg 1.573 r_scbond_other 1.052 r_scbond_it 1.039 r_mcbond_it 0.671 r_mcbond_other 0.67 r_angle_other_deg 0.509 r_chiral_restr 0.066 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1355 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing